CDS

Accession Number TCMCG057C01050
gbkey CDS
Protein Id XP_018490049.1
Location complement(join(4327705..4328040,4328337..4328546,4328645..4328791,4328873..4329274))
Gene LOC108860687
GeneID 108860687
Organism Raphanus sativus

Protein

Length 364aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018634547.1
Definition PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category J
Description component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
KEGG_TC -
KEGG_Module M00097        [VIEW IN KEGG]
KEGG_Reaction R09655        [VIEW IN KEGG]
KEGG_rclass RC02636        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03012        [VIEW IN KEGG]
ko04147        [VIEW IN KEGG]
KEGG_ko ko:K03247        [VIEW IN KEGG]
ko:K15744        [VIEW IN KEGG]
EC 5.2.1.12        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00906        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
ko03013        [VIEW IN KEGG]
ko05162        [VIEW IN KEGG]
map00906        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
map05162        [VIEW IN KEGG]
GOs GO:0001101        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005840        [VIEW IN EMBL-EBI]
GO:0005844        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006446        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009733        [VIEW IN EMBL-EBI]
GO:0009737        [VIEW IN EMBL-EBI]
GO:0009743        [VIEW IN EMBL-EBI]
GO:0009744        [VIEW IN EMBL-EBI]
GO:0009746        [VIEW IN EMBL-EBI]
GO:0009749        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032270        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033993        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034250        [VIEW IN EMBL-EBI]
GO:0034284        [VIEW IN EMBL-EBI]
GO:0034285        [VIEW IN EMBL-EBI]
GO:0034286        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042788        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045727        [VIEW IN EMBL-EBI]
GO:0045948        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051247        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0097305        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGGTTTATCATCTCCTCCTCTCGACCTCTCCTTCGCTTGTTCTTCCTCCTCGCCGACCCAACTTCAGCTCAATCCACCGCCGGATACCACCAGCTCACCCTCGTCTCACAAAATTCACCACCTCGCCTTCTTCGTCTCCACCAGTAATTCGGAAAATTCTCGTCCGCAGCACTCTCCGGGAAGACCCCGTTTCTCCCGACGCAGACAATCCAACTCTGCTGATCGGAGAAGACTCTGCTGCTTTCGAATTAGGCAAACAGAAGCTCGTTTCCTGGGTTTATTTCGGCGTTATCCTTGGAGTCGTTCTCTACATCCTCAACGTAGTCTGGATCGATAACTCCACCGGTTTCGGTAAATCATACATCGACGCCGTCTCCGCCGTCTCCGGCTCGCCGGAGGTGGCGATGTTAATGCTTATACTCATCTTCGCAACTGTGCACAGTGGATTAGCTAGTCTCAGAGATGTAGGAGAGAAACTCATAGGCGAAAGAGCGTTTCGTGTTCTGTTTGCTGGAGTCTCTCTTCCTCTAGCTATGAGCACCATTGTTTTCTTTATAAACCATAGATACGATGGGTCACAGTTATGGCAGCTTCAGGGTGTTCCGGGTGTCCATGAAGCTATCTGGTTCGCTAACTTTGTCTCCTTCTTCTTTCTCTATCCTTCTACCTTCAATCTTCTCGAGGTCGCTGCTGTTGATAAACCCAAGATGCATCTCTGGGAGACTGGCATCATCAGAATCACTCGTCACCCTCAGATGGTTGGACAAATAGTTTGGTGTTTAGCGCACACTCTCTGGATTGGAAACTCAGTAGCTGCATCGGCGTCTCTTGGTTTGATTGCACACCATTTGTTTGGGGCGTGGAATGGAGACAGGAGACTAGCTAAAAGATACGGAGATGCTTTCGAAGGCATCAAGAAGAGAACGAGTGTGATTCCTTTTGCTGCCATTATTGAAGGACGCCAAGTTTTGCCTAAGGATTACTACAAAGAGTTTGTTCGGTTGCCTTATCTTGCAATCACGGCGTTAACAGTTGGAGCCTATTTTGCTCACCCGCTAATGCAAGGTGCGAGCTTCAGGCTTCATTGGTAG
Protein:  
MAVYHLLLSTSPSLVLPPRRPNFSSIHRRIPPAHPRLTKFTTSPSSSPPVIRKILVRSTLREDPVSPDADNPTLLIGEDSAAFELGKQKLVSWVYFGVILGVVLYILNVVWIDNSTGFGKSYIDAVSAVSGSPEVAMLMLILIFATVHSGLASLRDVGEKLIGERAFRVLFAGVSLPLAMSTIVFFINHRYDGSQLWQLQGVPGVHEAIWFANFVSFFFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQMVGQIVWCLAHTLWIGNSVAASASLGLIAHHLFGAWNGDRRLAKRYGDAFEGIKKRTSVIPFAAIIEGRQVLPKDYYKEFVRLPYLAITALTVGAYFAHPLMQGASFRLHW